ANTS Class 1: 7/21/2016


Setting up ANTS (done on Taisen):
   goto software location
   git clone git://github.com/stnava/ANTs.git
   mkdir antsbin
   cd antsbin
   ccmake ../ANTs
       in cmake type "c" twice and then "g" [wait 30 minutes+]
   make -j 4 [wait 30 minutes+]
Setting up in your path (per individual):
   gedit .bash_profile &
   export PATH=$PATH:$HOME/bin: ... :/mnt/nfs/software/antsbin/bin/:/mnt/nfs/software/ANTs/Scripts/

Setting up ANTsR (done on Taisen):
   open R or rstudio
      library( devtools )
      install_github("stnava/ITKR")
      install_github("stnava/ANTsR")

Primary ANTs and ANTsR resources:
      ANTs: website pdf
      ANTsR: website pdf

Building a Template: or mildly modified example.txt
 ./buildtemplateparallel.sh -r 1 -c 0 -d 3 -o PEtemplate_ *.nii.gz