AFNI Class Notes 5/12/16:

Helpful AFNI links:

AFNI lessons:

https://afni.nimh.nih.gov/pub/dist/edu/2016_0222_lister_hill/

AFNI data example:

https://afni.nimh.nih.gov/pub/dist/edu/data/CD.expanded/AFNI_data6/

Tools discussed:

Dicom-to-BRIK/NIFTI tools:

dcm2nii

to3d

Dimon

Distortion correction:

field map correction: FUGUE but use Keck fieldmap.html

topup correction: topup but use Keck howtoindex.html

              First Step in processing:

                              uber_subject.py: gui for creation of afni_proc.py