AFNI Class Notes 8/16/2019:
Helpful AFNI links:
AFNI lessons:
https://afni.nimh.nih.gov/pub/dist/edu/2016_0222_lister_hill/
AFNI data example:
https://afni.nimh.nih.gov/pub/dist/edu/data/CD.expanded/AFNI_data6/
Tools discussed:
Dicom-to-BRIK/NIFTI tools:
dicom_hdr: outputs dicom information to commandline
dcm2nii: part of MRIcro package that reads header details
dcm2niix: part of MRIcroGL package that fits BIDS
to3d: afni, defaults to AFNI but can do NIFTI.
Dimon: afni function that reads dicom header designed for real time
Distortion correction:
field map correction: FUGUE but use Keck fieldmap.html
topup correction: topup but use Keck howtoindex.html
First Step in processing:
uber_subject.py: gui for creation of afni_proc.py
Multiband on GE: 
multiband_explaination_adj_20190823.pptx