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AFNI Class Notes 8/16/2019:

Helpful AFNI links:

AFNI lessons:

AFNI data example:

Tools discussed:

Dicom-to-BRIK/NIFTI tools:

dicom_hdr: outputs dicom information to commandline

dcm2nii: part of MRIcro package that reads header details

dcm2niix: part of MRIcroGL package that fits BIDS 

to3d: afni, defaults to AFNI but can do NIFTI.

Dimon: afni function that reads dicom header designed for real time

Distortion correction:

field map correction: FUGUE but use Keck fieldmap.html

topup correction: topup but use Keck howtoindex.html

              First Step in processing:

                     gui for creation of

Multiband on GE: multiband_explaination_adj_20190823.pptx