The Ideker Laboratory has assembled and published many gene and protein interaction networks. These networks are available on the Network Data Exchange (NDEx) website. The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge.
Hierarchical Cell Models
Our computational analysis pipelines translate molecular networks and other data from genomics into hierarchical models of the cell. Web portals for each of these models are linked below:
Yeast Cell Ontology (NeXO)
Autophagy Ontology (AtgO)
Additionally, specific datasets are listed with their corresponding publication on the Primary Research page.