Lytle NK, et al. A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma. Cell. 2019 Mar 29. [PDF] [PubMed]
Yu MK, Ma J, et al. DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies. Cell Syst. 2019 Mar 27. [PDF] [PubMed]
Wallace ZS, et al. On entropy and information in gene interaction networks. Bioinformatics. 2019 Mar 1. [PDF] [PubMed]
Ribosomal DNA Can Predict an Animal’s Age. Abby Olena, The Scientist Magazine. (Feb 14, 2019). PDF.
Trey Ideker included in new listing of highly cited researchers in the top 1% for their field. 45 UC San Diego Faculty Named Most Influential in Their Fields. Michelle Franklin, UC San Diego News Center. (November 28, 2018)
JMB Special Issue: Theory and Application of Network Biology Toward Precision Medicine. (14Sept 2018) Edited by Barry Demchak, Jason F. Kreisberg, Juan I. Fuxman Bass. Cover art by Kivilcim Ozturk, Michelle Dow and Hannah Carter.
“Genetic Mutations of Appendix Cancer Identified, May Impact Treatment,” features Drs. John Paul Shen, Trey Ideker, and Olivier Harismendy
Visible Machine Learning for Biomedicine. Michael Yu, et al. CELL. 14 JUN 2018. [PDF]
"Gems in the 'Junk' - Noncoding mutations found to be a major mechanism in cancer," DDN News. (22 May 2018).
"Cracking Open the Black Box of AI with Cell Biology." IEEE Spectrum, (13 Mar 2018).
"Researchers Identify Hundreds of Mutations outside of Coding Genes that Influence Tumor Gene Expression," SCI NEWS. (06 Apr 2018)