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Publications

 

Complete list of publications at:  https://scholar.google.com/citations?user=nlWQnXMAAAAJ&hl=en

Selected publications:

 

2017

Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, Carter H MHC-I genotype restricts the oncogenic mutational landscape Cell (2017)(In Press)

Ortiz D, Tsui B, Goshia T, Chute-Ricker C, Han A, Carter H, Fraley SI 3D collagen architecture induces vascular mimicry through an integrin b1 mediated migratory and transcriptional response Nature Communications (2017) (In Press)

Xu R, Wei W,Krawczyk M, Wang W, Luo H, Flagg K, Yi S, Shi W, Li K, Zheng L, Zhang H, Caughey BA, Zhao Q, Hou J, Zhang R, Xu Y, Cai H, Li G, Hou R, Zhong Z, Lin D, Fu X, Zhu J, Duan Y, Zhang E, Zhang C, Li O, Carter H, Zhu J, Hao X, Zhang
K ctDNA methylation markers for diagnosis and prognosis of hepatocellular carcinoma (2017) Nature Materials (In Press)

Engin B, Carlin D, Pratt D, Carter H Modeling of RAS Complexes Supports Roles in Cancer for Less Studied Partners BMC Biophysics Aug 11;10(1):5 (2017)

Buckley AR, Standish KA, Bhutani K, Ideker T, Harismendy O, Carter H, Schork NJ. Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls BMC Genomics Jun 12;18(1):458. (2017)

Carter H, Marty R, Hofree M, Gross A, Jensen J, Fisch K, Wu X, DeBoever C, Van Nostrand E, Song Y, Wheeler E, Kreisberg J, Lippman S, Yeo G, Gutkind S, Ideker T Widespread interacion of inherited polymorphisms with somatic events in cancer  Cancer Discovery Apr 1;7(4):410-23 (2017)

 

2016

Levy E, Marty R, Garate-Calderon V, Woo B, Dow M, Armisen R, Carter H, Harismendy O Immune DNA signature of T-Cell infiltration in breast tumor exomes Scientific Reports 6, Article number: 30064  (2016)

Hofree M, Carter H, Kreisberg J, Bandyopadhyay S, Mischel P, Friend S, Ideker T Challenges in identifying cancer genes by analysis of exome sequencing data Nat Comm Jul 15;7:12096 (2016)

Engin B, Kreisberg J, Carter H Structure-based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces PLoS One Apr 4;11(4):e0152929 (2016)

 

2015

Font-Burgada J, Shalapour S, Ramaswamy S, Hsueh B, Rossell D, Umemura A, Taniguchi K, Nakagawa H, Valasek M, Ye L, Kopp JL, Sander M, Carter H, Deisseroth K, Verma I and Karin M Periportal Hybrid Hepatocytes Regenerate the Injured Liver without Giving Rise to Cancer Cell, 162(4), 766-779 (2015)

Engin B, Hofree M, Carter H Identifying Mutation-Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network Pac Symp Biocomput. 84-95 (2015)