• Principles of Biomedical Informatics (MED264)
  
• Current Trends in Biomedical Informatics (MED262)
  
• Cancer Genomics Journal Club (MED278)
  

Featured Projects

• CA COVID Notify is a new voluntary pilot program that uses Apple and Google smartphone technology to help rapidly control COVID-19 outbreaks.
• Block Estimate Chain: creating Knowledge ON demand & protecting privacy.  Artificial intelligence performed jointly between multiple collaborating institutions can accelerate genomic medicine research and facilitate quality improvement, but relies on a trust model which may be too optimistic in real-world setting. 
• COVID-19 Data Index, covid19dataindex.org, collects and indexes all types of COVID-19 datasets from major data repositories, publications, and individual online sources.
• Strong Heart Study - iDASH, NHBLI
• Accrual to Clinical Trials CTSA , NIH
• Patient-Centered Scalable National Network for Effectiveness Research pSCANNER, PCORI
• University of California Research exchange UC-ReX, UCOP
• Protection of Records: Privacy Technology for Medical Research PREP, NLM
• Informed CONsent for Clinical data and biosample Use in Research iCONCUR, NIH
• California Precision Medicine Consortium CaPMC, NIH

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• Matthews, B, Fredrickson, M, El-Kareh, R Structured case reviews for organizational learning about diagnostic vulnerabilities: initial experiences from two medical centers.  
• Diagnosis (Berl)
  2020 Jan 28;7(1):27-35. doi: 10.1515/dx-2019-0032.
• Bonomi, L., Huang, Y. & Ohno-Machado, L. Privacy challenges and research opportunities for genomic data sharing. Nat Genet 52, 646–654 (2020).
  
• Reeves J, Hollandsworth H, Longhurst, CA Rapid response to COVID-19: health informatics support for outbreak management in an academic health system.  2020 Jun 1;27(6):853-859. doi: 10.1093/jamia/ocaa037.
  
• Shashikumar, S, Paul, P, Nemati, S Development and Prospective Validation of a Transparent Deep Learning Algorithm for Predicting Need for Mechanical Ventilation.  2020 Jun 3;2020.05.30.20118109. doi: 10.1101/2020.05.30.20118109. Preprint
  
• Bonomi, L., Huang, Y. & Ohno-Machado, L. Privacy challenges and research opportunities for genomic data sharing. Nat Genet 52, 646–654 (2020).
  
• Kuo T, Gabriel R, Cidambi K, Ohno-Machado, L, EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning.  Journal of the American Medical Informatics Association, Volume 27, Issue 5, May 2020, Pages 747–756
  
• Tully J, Dameff C, Longhurst CA.  Wave of Wearables: Clinical Management of Patients and the Future of Connected Medicine. Clin Lab Med. 2020 Mar;40(1):69-82. doi: 10.1016/j.cll.2019.11.004. Epub 2020 Jan 7. Review. PMID: 32008641 [PubMed - in process].
• Dow, M., Pyke, R. M., Tsui, B. Y., Alexandrov, L. B., Nakagawa, H., Taniguchi, K., … Font-Burgada, J. Integrative genomic analysis of mouse and human hepatocellular carcinoma. Proceedings of the National Academy  of Sciences. 2018. doi: 10.1073/pnas.1811029115
• Kim J, Kim H, Bell E, Bath T, Paul P, Pham A, Jiang X, Zheng K, Ohno-Machado L.  Patient Perspectives About Decisions to Share Medical Data and Biospecimens for Research.  JAMA Netw Open. 2019 Aug 2;2(8):e199550. doi: 10.1001/jamanetworkopen.2019.9550.