The GlycoAnalytics Core benefits from being acknowledged in scientific manuscripts. Thank you for acknowledging our work: "Analysis was performed by the UC San Diego GlycoAnalytics Core."

Enhancing FcγR-mediated antibody effector function during persistent viralinfection. Wieland A., Kamphorst AO, Valanparambil RM, Han JH, Xu X, Choudhury BP, Ahmed R. Science Immunology  21 Sep 2018:
Vol. 3, Issue 27, eaao3125. DOI: 10.1126/sciimmunol.aao3125. PMID: 30242080

The Biosynthesis of Lipooligosaccharide from Bacteroides thetaiotaomicron. Jacobson AN., Choudhury BP., Fischbach MA. 2018. DOI:10.1128/mBio.02289-17. PMCID: PMC5850320

Comparison of lipopolysaccharides composition of two different strains of Helicobacter pylori.  Leker K,  Lozano-Pope I, Bandyopadhyay K,  Choudhury BP, Obonyo M. BMC Microbiology. 2017  Dec; 17:226. DOI 10.1186/s12866-017-1135-y. PMCID: PMC5715995

Activation of Parathyroid Hormone 2 Receptor Induces Decorin Expression and Promotes Wound Repair. Sato E, Zhang LJ, Dorschner RA, Adase CA, Choudhury BP, Gallo RL. J Invest Dermatol. 2017 Aug;137(8):1774-1783. doi: 10.1016/j.jid.2017.03.034. Epub 2017 Apr 26. PMCID: PMC5810351 

Physiological Exploration of the Long Term Evolutionary Selection against Expression of N-Glycolylneuraminic Acid in the Brain. Naito-Matsui Y, Davies LR, Takematsu H, Chou HH, Tangvoranuntakul P, Carlin AF, Verhagen A, Heyser CJ, Yoo SW, Choudhury B, Paton JC, Paton AW, Varki NM, Schnaar RL, Varki A. J Biol Chem. 2017 Feb 17;292(7):2557-2570. doi: 10.1074/jbc.M116.768531. Epub 2017 Jan 3.  PMCID: PMC5314156 

Sialylation Facilitates the Maturation of Mammalian Sperm and Affects Its Survival in Female Uterus. Ma X, Pan Q, Feng Y, Choudhury BP, Ma Q, Gagneux P, Ma F. Biol Reprod. 2016 Jun;94(6):123. doi: 10.1095/biolreprod.115.137810. Epub 2016 Apr 13. PMCID: PMC4946803

Differing Efficacies of Lead Group A Streptococcal Vaccine Candidates and Full-Length M Protein in Cutaneous and Invasive Disease Models. Rivera-Hernandez T, Pandey M, Henningham A, Cole J, Choudhury B, Cork AJ, Gillen CM, Ghaffar KA, West NP, Silvestri G, Good MF, Moyle PM, Toth I, Nizet V, Batzloff MR, Walker MJ. MBio. 2016 Jun 14;7(3). pii: e00618-16. doi: 10.1128/mBio.00618-16. PMCID: PMC4916377 

Tang XX, Ostedgaard LS, Hoegger MJ, Moninger TO, Karp PH, McMenimen JD, Choudhury B, Varki A, Stoltz DA, Welsh MJ. J Clin Invest. (2016) Acidic pH increases airway surface liquid viscosity in cystic fibrosis. 126(3):879-91.  PMCID: PMC4767348

Patra KP†, Choudhury B†, Matthias MM, Baga S, Bandyopadhya K, Vinetz JM. † Contributed equally. BMC Microbiol. (2015) Comparative analysis of lipopolysaccharides of pathogenic and intermediately pathogenic Leptospira species. Oct 30;15(1):244. doi: 10.1186/s12866-015-0581-7. PMCID: PMC4628369

Argade S, Chen T, Shaw T, Berecz Z, Shi W, Choudhury B, Lowell Parsons C, Sur RL. (2015) An evaluation of Tamm-Horsfall protein glycans in kidney stone formers using novel techniques. Urolithiasis. PMID: 25935139

Van Wijk XM, Lawrence R, Thijssen VL, van den Broek SA, Troost R, van Scherpenzeel M, Naidu N, Oosterhof A, Griffioen AW, Lefeber DJ, van Delft FL, van Kuppevelt TH. (2015) A common sugar-nucleotide-mediated mechanism of inhibition of (glycosamino)glycan biosynthesis, as evidenced by 6F-GalNAc (Ac3). FASEB J. pii: fj.14-264226. PMCID: PMC4478805

Wieland A, Shashidharamurthy R, Kamphorst A, Han JH, Aubert RD, Choudhury BP, Stowell SR, Lee J, Punkosdy GA, Shlomchik MJ, Selvaraj P, Ahmed R. (2015) Antibody effector functions mediated by Fcγ-receptors are compromised during persistent viral infection. Immunity. 42(2):367-78. doi: 10.1016/j.immuni.2015.01.009. PMCID: PMC4339104

Henningham A, Yamaguchi M, Aziz RK, Kuipers K, Buffalo CZ, Dahesh S, Choudhury B, Van Vleet J, Yamaguchi Y, Seymour LM, Ben Zakour NL, He L, Smith HV, Grimwood K, Beatson SA, Ghosh P, Walker MJ, Nizet V, Cole JN. (2014) Mutual exclusivity of hyaluronan and hyaluronidase in invasive group a streptococcus. J Biol Chem. 289(46):32303-15. doi: 10.1074/jbc.M114.602847. PMCID: PMC4231703

Wen J, Xiao J, Rahdar M, Choudhury BP, Cui J</A, Taylor GS, Esko JD, Dixon JE. (2014) Xylose phosphorylation functions as a molecular switch to regulate proteoglycan biosynthesis. Proc Natl Acad Sci USA. 111(44):15723-8. doi: 10.1073/pnas.1417993111. PMCID: PMC4226115

van Sorge NM, Cole JN, Kuipers K, Henningham A, Aziz RK, Kasirer-Friede A, Lin L, Berends ET, Davies MR, Dougan G, Zhang F, Dahesh S, Shaw L, Gin J, Cunningham M, Merriman JA, Hütter J, Lepenies B, Rooijakkers SH, Malley R, Walker MJ, Shattil SJ, Schlievert PM, Choudhury B, Nizet V. (2014) The classical lancefield antigen of group a streptococcus is a virulence determinant with implications for vaccine design. Cell Host Microbe. 15(6):729-40.  PMCID: PMC4078075

UC San Diego Health System News Release: A Key Step Toward a Safer Strep Vaccine

Ng KM, Ferreyra JA, Higginbottom SK, Lynch JB, Kashyap PC, Gopinath S, Nadiu N, Choudhury B, Weimer BC, Monack DM, and Sonnenburg JL. (2013) Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature. 502(7469):96-9.  PMCID: PMC3825626

Akizu N, Cantagrel V, Schroth J, Cai N, Vaux K, McCloskey D, Naviaux RK, Van Vleet J, Fenstermaker AG, Silhavy JL, Scheliga JS, Toyama K, Morisaki H, Sonmez FM, Celep F, Oraby A, Zaki MS, Al-Baradie R, Faqeih E, Saleh M, Spencer E, Rosti RO, Scott E, Nickerson E, Gabriel S, Morisaki T, Holmes EW, and Gleeson JG. (2013) AMPD 2 Regulates GTP Synthesis and Is Mutated in a Potentially Treatable Neurodegenerative Brainstem Disorder. Cell. 154(3):505-517. PMID:23911318PMCID:PMC3815927

Jantscher-Krenn E, Zherebtsov M, Nissan C, Goth K, Guner YS, Naidu N, Choudhury B, Grishin AV, Ford HR, Bode L. (2012) The human milk oligosaccharide disialyllacto-N-tetraose prevents necrotising enterocolitis in neonatal rats. Gut. 61(10):1417-25. PMID: 22138535, PMCID: PMC3909680

Kowalewski B, Lamanna WC, Lawrence R, Damme M, Stroobants S, Padva M, Kalus I, Frese MA, Lübke T, Lüllmann-Rauch R, D'Hooge R, Esko JD, Dierks T. (2012) Arylsulfatase G inactivation causes loss of heparan sulfate 3-O-sulfatase activity and mucopolysaccharidosis in mice. Proc Natl Acad Sci U S A. 109(26):10310-5.  PMCID: PMC3387061

Dehnert KW, Baskin JM, Laughlin ST, Beahm BJ, Naidu NN, Amacher SL, Bertozzi CR. (2012) Imaging the sialome during zebrafish development with copper-free click chemistry. Chembiochem. 13(3):353-7. doi: 10.1002/cbic.201100649.  PMCID: PMC3385855

Lawrence R, Brown JR, Al-Mafraji K, Lamanna WC, Beitel JR, Boons GJ, Esko JD, Crawford BE. (2012) Disease-specific non-reducing end carbohydrate biomarkers for mucopolysaccharidoses. Nat Chem Biol. 8(2):197-204. doi:10.1038/nchembio.766. PMCID: PMC3262053

Inamori K, Yoshida-Moriguchi T, Hara Y, Anderson ME, Yu L, Campbell KP. (2012) Dystroglycan function requires xylosyl- and glucuronyltransferase activities of LARGE. Science. 335(6064):93-6.  PMCID: PMC3702376

Grigorian A, Araujo L, Nadiu NN, Place DJ, Choudhury B, Demertriou M. (2011) N-Acetylglucosamine inhibits T-helper 1(Th1)/T-helper 17(Th17) cell responses and treats experimental autoimmune encephalomyelitis. J Biol Chem. 286(46):40133-41. PMCID: PMC3220534

Muto J, Naidu NN, Yamasaki K, Pineau N, Breton L, Gallo RL. (2011) Exogenous addition of a C-xylopyranoside derivative stimulates keratinocyte dermatan sulfate synthesis and promotes migration. PLoS One. 6(10):e25480.  PMCID: PMC3187761 

Lewis AL, Lubin JB, Argade S, Naidu N, Choudhury B, Boyd EF. (2011) Genomic and metabolic profiling of nonulosonic acids in Vibrionaceae reveal biochemical phenotypes of allelic divergence in Vibrio vulnificus. Appl Environ Microbiol. 77(16):5782-93.  PMCID: PMC3165262

Parsons CL, Proctor J, Teichman JS, Nickel JC, Davis E, Evans R, Zupkas P, Phillips C, Shaw T, Naidu N, Argade S. (2011) A multi-site study confirms abnormal glycosylation in the Tamm-Horsfall protein of patients with interstitial cystitis. J Urol. 186(1):112-6. PMID: 21571325

Qu X, Carbe C, Tao C, Powers A, Lawrence R, van Kuppevelt TH, Cardoso WV, Grobe K, Esko JD, Zhang X. (2011) Lacrimal gland development and Fgf10-Fgfr2b signaling are controlled by 2-O- and 6-O-sulfated heparan sulfate. J Biol Chem. 286(16):14435-44. PMCID: PMC3077643

Xu D, Fuster MM, Lawrence R, Esko JD. (2011) Heparan sulfate regulates VEGF165- and VEGF121-mediated vascular hyperpermeability. J Biol Chem. 286(1):737-45.  PMCID: PMC3013032

Apicella MA, Post DM, Fowler AC, Jones BD, Rasmussen JA, Hunt JR, Imagawa S, Choudhury B, Inzana RJ, Maier TM, Frank DW, Zahrt TC, Chaloner K, Jennings MP, McLendon MK, Gibson BW. (2010) Identification, characterization and immunogenicity of an O-antigen capsular polysaccharide in Francisella tularensis. PLoS One. 5(7):e11060. PMID: 20625403, PMCID: PMC2897883

Yoshida-Moriguchi T, Yu L, Stalnaker SH, Davis S, Kunz S, Madson M, Oldstone MB, Schachter H, Wells L, Campbell KP. (2010) O-mannosyl phosphorylation of alpha-dystroglycan is required for laminin binding. Science. 327(5961):88-92. PMID: 20044576PMCID: PMC2978000

Agrade SP, Vanichsarn C, Chenoweth M, Parsons CL. (2009) Abnormal glycosylation of Tamm-Horsfall protein in patients with interstitial cystitis. BJU Int. 103(8):1085-9. PMID: 19007360

Yu S, Xie H, Datta A, Naidu N, Gu XX. (2008) Galactose residues on the lipooligosaccharide of Moraxella catarrhalis 26404 form the epitope recognized by the bactericidal antiserum from conjugate vaccination. Infec Immun. 76(9):4251-8. PMID: 18559429, PMCID: PMC2519401 

Lawrence R, Olson SK, Steele RE, Wang L, Warrior R, Cummings RD, Esko JD. (2008) Evolutionary differences in glycosaminoglycan fine structure detected by quantitative glycan reductive isotope labeling. J Biol Chem. 283(48):33674-84. PMID: 18818196, PMCID: PMC2586254

Hedlund M, Padler-Karavani V, Varki NM, Varki A. (2008) Evidence for a human-specific mechanism for diet and antibody-mediated inflammation in carcinoma progression. Proc Natl Acad Sci USA. 105(48):18936-41. PMID: 19017806, PMCID: PMC2596253 

Parsons CL, Stein P, Zupkas P, Chenoweth M, Argade SP, Proctor JG, Datta A, Trotter RN. (2007) Defective Tamm-Horsfall protein in patients with interstitial cystitis. J Urol. 178(6):2665-70. PIMD: 17945284

Lee SU, Grigorian A, Pawling J, Chen IJ, Gao G, Mozaffar T, McKerlie C, Demetriou M. (2007) N-glycan processing deficiency promotes spontaneous inflammatory demyelination and neurodegeneration. J Biol Chem. 282(46):33725-34. PIMD: 17855338

Locke JB, Colvin KM, Datta AK, Patel SK, Naidu NN, Neely MN, Nizet V, Buchanan JT. (2007) Streptococcus iniae capsule impairs phagocytic clearance and contributes to virulence in fish. J Bacteriol. 189(4):1279-87. PIMD: 17098893, PMCID: PMC1797360

Wahrenbrock MG, Varki A. (2006) Multiple hepatic receptors cooperate to eliminate secretory mucins aberrantly entering the bloodstream: are circulating cancer mucins the "tip of the iceberg"? Cancer Res. 66(4):2433-41. PIMD: 16489050

Qin C, Huang B, Wygant JN, McIntyre BW, McDonald CH, Cook RG, Butler WT. (2006) A chondroitin sulfate chain attached to the bone dentin matrix protein 1 NH2-terminal fragment. J Biol Chem. 281(12):8034-40. PIMD: 16421105

Horie T, Horie R, Chan WY, Leung HY, Schroeder JI. (2006) Calcium regulation of sodium hypersensitivities of sos3 and athkt1 mutants. Plant Cell Physiol. 47(5):622-33. PIMD: 16540484

Kaneko Y, Nimmerjahn F, Ravetch JV. (2006) Anti-inflammatory activity of immunoglobulin G resulting from Fc sialylation. Science. 313(5787):670-3. PIMD: 16888140

Rabuka D, Hubbard SC, Laughlin ST, Argade SP, Bertozzi CR. (2006) A chemical reporter strategy to probe glycoprotein fucosylation. J Am Chem Soc. 128(37): 12078-9. PIMD: 16967952, PMCID: PMC3233198 

Sonnenburg JL, Chen CT, Gordon JI. (2006) Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol. 4(12):e413. PIMD: 17132046, PMCID: PMC1661682 

Argüeso P, Sumiyoshi M. (2006) Characterization of a carbohydrate epitope defined by the monoclonal antibody. H185: sialic acid O-acetylation on epithelial cell-surface mucins. Glycobiology. 16(12):1219-28. Epub 2006 Aug 29. PIMD: 16940404, PMCID: PMC1976397 

Sonnenburg JL, Xu J, Leip DD, Chen CH, Westover BP, Weatherford J, Buhler JD, Gordon JI. (2005) Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science. 307(5717):1955-9. PIMD: 15790854

Ampel NM, Nelson DK, Li L, Dionne SO, Lake DF, Simmons KA, Pappagianis D. (2005) The mannose receptor mediates the cellular immune response in human coccidioidomycosis. Infect Immun. 73(4):2554-5. PIMD: 15784604, PMCID: PMC1087400 

Ferguson GP, Datta A, Carlson RW, Walker GC. (2005) Importance of unusually modified lipid A in Sinorhizobium stress resistance and legume symbiosis. Mol Microbiol. 56(1):68-80. PIMD: 15773979

Srikrishna G, Brive L, Freeze HH. (2005) Novel carboxylated N-glycans contain oligosaccharide-linked glutamic acid. Biochem Biophys Res Commun. 332(4):1020-7. PIMD: 15922305

Grobe K, Inatani M, Pallerla SR, Castagnola J, Yamaguchi Y, Esko JD. (2005) Cerebral hypoplasia and craniofacial defects in mice lacking heparan sulfate Ndst1 gene function. Development. 132(16):3777-86. PIMD: 16020517

Stevenson JL, Choi SH, Varki A. (2005) Differential metastasis inhibition by clinically relevant levels of heparins--correlation with selectin inhibition, not antithrombotic activity. Clin Cancer Res. 11(19 Pt 1):7003-11. PIMD: 16203794

Bastida-Corcuera FD, Okumura CY, Colocoussi A, Johnson PJ. (2005) Trichomonas vaginalis lipophosphoglycan mutants have reduced adherence and cytotoxicity to human ectocervical cells. Eukaryot Cell. 4(11):1951-8. PIMD: 16278462, PMCID: PMC1287856 

Eklund EA, Merbouh N, Ichikawa M, Nishikawa A, Clima JM, Dorman JA, Norberg T, Freeze HH. (2005) Hydrophobic Man-1-P derivatives correct abnormal glycosylation in Type I congenital disorder of glycosylation fibroblasts. Glycobiology. 15(11):1084-93. PIMD: 16079417

Edwards KJ, Schwingel JM, Datta AK, Campagnari AA. (2005) Multiplex PCR assay that identifies the major lipooligosaccharide serotype expressed by Moraxella catarrhalis clinical isolates. J Clin Microbiol. 43(12):6139-43. PIMD: 16333114, PMCID: PMC1317230 

Griffitts JS, Haslam SM, Yang T, Garczynski SF, Mulloy B, Morris H, Cremer PS, Dell A, Adang MJ, Aroian RV. (2005) Glycolipids as receptors for Bacillus thuringiensis crystal toxin. Science. 307(5711):922-5. PIMD: 15705852

Lewis AL, Nizet V, Varki A. (2004) Discovery and characterization of sialic acid O-acetylation in group B Streptococcus. Proc Natl Acad Sci U S A. 101(30):11123-8. PIMD: 15263085, PMCID: PMC503750

Prescher JA, Dube DH, Bertozzi CR. (2004) Chemical remodelling of cell surfaces in living animals. Nature. 430(7002):873-7. PIMD: 15318217

Luchansky SJ, Bertozzi CR. (2004) Azido sialic acids can modulate cell-surface interactions. Chembiochem. 5(12):1706-9. PIMD: 15568180

Banerjee A, Ghosh SK. (2003) The role of pilin glycan in neisserial pathogenesis. Mol Cell Biochem. 253(1-2):179-90. PIMD: 14619968

Wang L, Brown JR, Varki A, Esko JD. (2002) Heparin's anti-inflammatory effects require glucosamine 6-O-sulfation and are mediated by blockade of L- and P-selectins. J Clin Invest. 110(1):127-36. PIMD: 12093896PMCID: PMC151027